Publications

@article{andersson1996yoph,

title = {YopH of Yersinia pseudotuberculosis interrupts early phosphotyrosine signalling associated with phagocytosis},

author = {Kerstin Andersson and Nivia Carballeira and Karl-Eric Magnusson and Cathrine Persson and Olle Stendahl and Hans Wolf-Watz and Maria Fällman},

year  = {1996},

date = {1996-01-01},

journal = {Molecular microbiology},

volume = {20},

number = {5},

pages = {1057--1069},

publisher = {Wiley Online Library},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{fallman1995yersinia,

title = {Yersinia pseudotuberculosis inhibits Fc receptor-mediated phagocytosis in J774 cells.},

author = {MARIA Fällman and Kerstin Andersson and SEBASTIAN Håkansson and Karl-Eric Magnusson and Olle Stendahl and Hans Wolf-Watz},

year  = {1995},

date = {1995-01-01},

journal = {Infection and immunity},

volume = {63},

number = {8},

pages = {3117--3124},

publisher = {Am Soc Microbiol},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{sarndahl1989association,

title = {Association of ligand-receptor complexes with actin filaments in human neutrophils: a possible regulatory role for a G-protein.},

author = {Eva Särndahl and Margaretha Lindroth and Torbjörn Bengtsson and Maria Fällman and Johanna Gustavsson and Olle Stendahl and Tommy Andersson},

year  = {1989},

date = {1989-01-01},

journal = {The Journal of cell biology},

volume = {109},

number = {6},

pages = {2791--2799},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Pinto-Irish2020,

title = {Seed characterization and early nitrogen metabolism performance of seedlings from Altiplano and coastal ecotypes of Quinoa. },

author = {Katherine Pinto-Irish and Teodoro Coba de la Peña and Enrique Ostria-Gallardo and Cristian Ibáñez and Vilbett Briones and Alexander Vergara and Rodrigo Alvarez and Catalina Castro and Carolina Sanhueza, Patricio A. Castro and Luisa Bascuñán-Godoy.},

doi = {10.1186/s12870-020-02542-w},

journal = {BMC Plant Biology},

volume = {20},

pages = {343},

keywords = {vergara},

pubstate = {published},

tppubtype = {article}

}

@article{liess2015terrestrial,

title = {Terrestrial runoff may reduce microbenthic net community productivity by increasing turbidity: a Mediterranean coastal lagoon mesocosm experiment},

author = {Antonia Liess and Carolyn Faithfull and Birte Reichstein and Owen Rowe and Junwen Guo and R Pete and Gustaf Thomsson and Wojciech Uszko and SN Francoeur},

journal = {Hydrobiologia},

volume = {753},

number = {1},

pages = {205--218},

publisher = {Springer International Publishing},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{gliwicz2012enhanced,

title = {Enhanced growth at low population density in Daphnia: the absence of crowding effects or relief from visual predation?},

author = {ZMACIEJ GLIWICZ and Piotr Maszczyk and Wojciech Uszko},

journal = {Freshwater Biology},

volume = {57},

number = {6},

pages = {1166--1179},

publisher = {Wiley Online Library},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{cherif2017operational,

title = {An operational framework for the advancement of a molecule-to-biosphere stoichiometry theory},

author = {Mehdi Cherif and Carolyn Faithfull and Junwen Guo and Cédric L Meunier and Judith Sitters and Wojciech Uszko and Francisco Rivera Vasconcelos},

journal = {Frontiers in Marine Science},

volume = {4},

pages = {286},

publisher = {Frontiers},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{fernandezmodeling,

title = {Modeling Protein Conformational Stability Using Amino Acid Sequence Autocorrelation Vectors and RBF Neural Networks},

author = {Michael Fernández and Julio Caballero and Leyden Fernández and Pedro Sánchez},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{fernandezamino,

title = {Amino Acid Sequence Autocorrelation vectors and ensembles of Bayesian-Regularized Genetic Neural Networks for prediction of conformational stability of protein mutants},

author = {Michael Fernández and Julio Caballero and Leyden Fernández and José Ignacio Abreu},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{arumugamsource,

title = {Source: Nature.},

author = {Manimozhiyan Arumugam and Jeroen Raes and Eric Pelletier and Denis Le Paslier and Takuji Yamada and Daniel R Mende and Gabriel R Fernandes and Julien Tap and Thomas Bruls and Jean-Michel Batto and others},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{wolpert2014optimal,

title = {Optimal high-level descriptions of dynamical systems},

author = {David H Wolpert and Joshua A Grochow and Eric Libby and Simon DeDeo},

journal = {arXiv preprint arXiv:1409.7403},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{bota2011dynamic,

title = {Dynamic communities and their detection},

author = {András Bóta and Miklós Krész and András Pluhár},

journal = {Acta Cybernetica},

volume = {20},

number = {1},

pages = {35--52},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{doi:10.1111/een.12679,

title = {Ecological stoichiometry and nutrient partitioning in two insect herbivores responsible for large-scale forest disturbance in the Fennoscandian subarctic},

author = {Daniel B Metcalfe and Mehdi Cherif and Jane U Jepsen and Ole Petter L Vindstad and Jeppe Å Kristensen and Ulrika Belsing},

url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/een.12679},

doi = {10.1111/een.12679},

journal = {Ecological Entomology},

volume = {0},

number = {0},

abstract = {1. Outbreaks of herbivorous insects can have large impacts on regional soil carbon (C) storage and nutrient cycling. In northernmost Europe, population outbreaks of several geometrid moth species regularly cause large-scale defoliation in subarctic birch forests. An improved understanding is required of how leaf C and nutrients are processed after ingestion by herbivores and what this means for the quantity and quality of different materials produced (frass, bodies). 2. In this study, larvae of two geometrid species responsible for major outbreaks (Epirrita autumnata and Operophtera brumata) were raised on exclusive diets of Betula pubescens var. czerepanovii (N. I. Orlova) Hämet Ahti and two other abundant understorey species (Betula nana, Vaccinium myrtillus). The quantities of C, nitrogen (N) and phosphorus (P) ingested and allocated to frass, bodies and (in the case of C) respired were recorded. 3. Overall, 23%, 70% and 48% of ingested C, N and P were allocated to bodies, respectively, rather than frass and (in the case of C) respiration. Operophtera brumata consistently maintained more constant body stoichiometric ratios of C, N and P than did E. autumnata, across the wide variation in physico-chemical properties of plant diet supplied. 4. These observed differences and similarities on C and nutrient processing may improve researchers' ability to predict the amount and stoichiometry of frass and bodies generated after geometrid outbreaks.},

keywords = {Consumer-driven nutrient recycling, ecological stoichiometry, geometrid moth, homeostasis, stable isotope, subarctic birch forest},

pubstate = {published},

tppubtype = {article}

}

@article{Libby2019,

title = {Shortsighted Evolution Constrains the Efficacy of Long-Term Bet Hedging},

author = {Eric Libby and William C. Ratcliff},

url = {https://www.journals.uchicago.edu/doi/abs/10.1086/701786},

doi = {10.1086/701786},

journal = {The American Naturalist},

volume = {0},

abstract = {To survive unpredictable environmental change, many organisms adopt bet-hedging strategies that are initially costly but provide a long-term fitness benefit. The temporal extent of these deferred fitness benefits determines whether bet-hedging organisms can survive long enough to realize them. In this article, we examine a model of microbial bet hedging in which there are two paths to extinction: unpredictable environmental change and demographic stochasticity. In temporally correlated environments, these drivers of extinction select for different switching strategies. Rapid phenotype switching ensures survival in the face of unpredictable environmental change, while slower-switching organisms become extinct. However, when both switching strategies are present in the same population, then demographic stochasticity—enforced by a limited population size—leads to extinction of the faster-switching organism. As a result, we find a novel form of evolutionary suicide whereby selection in a fluctuating environment can favor bet-hedging strategies that ultimately increase the risk of extinction. Population structures with multiple subpopulations and dispersal can reduce the risk of extinction from unpredictable environmental change and shift the balance so as to facilitate the evolution of slower-switching organisms.},

keywords = {evolution, extinction, Libby},

pubstate = {forthcoming},

tppubtype = {article}

}

@article{Jonsson2019,

title = {Modelling of zero-inflation improves inference of metagenomic gene count data},

author = {Viktor Jonsson and Tobias Österlund and Olle Nerman and Erik Kristiansson},

doi = {https://doi.org/10.1177/0962280218811354},

journal = { Statistical Methods in Medical Research},

volume = {28},

number = {12},

pages = {3712–3728},

keywords = {Jonsson},

pubstate = {published},

tppubtype = {article}

}