Profile

Affiliate Assistant Professor.
Fighting bacterial pathogens using bioinformatics. Food, wine, and cat enthusiast.
Publications
Carroll, Laura M; Cheng, Rachel A; Wiedmann, Martin; Kovac, Jasna
Keeping up with the Bacillus cereus group: taxonomy through the genomics era and beyond Journal Article
In: Critical reviews in food science and nutrition, vol. 62, no. 28, pp. 7677–7702, 2022.
@article{carroll2022keeping,
title = {Keeping up with the Bacillus cereus group: taxonomy through the genomics era and beyond},
author = {Laura M Carroll and Rachel A Cheng and Martin Wiedmann and Jasna Kovac},
year = {2022},
date = {2022-01-01},
journal = {Critical reviews in food science and nutrition},
volume = {62},
number = {28},
pages = {7677--7702},
publisher = {Taylor & Francis},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mahoney, David Burke James; Falardeau, Justin; Hingston, Patricia; Chmielowska, Cora; Carroll, Laura M; Wiedmann, Martin; Jang, Sung Sik; Wang, Siyun
Associations between Listeria monocytogenes genomic characteristics and adhesion to polystyrene at 8° C Journal Article
In: Food Microbiology, vol. 102, pp. 103915, 2022.
@article{mahoney2022associations,
title = {Associations between Listeria monocytogenes genomic characteristics and adhesion to polystyrene at 8° C},
author = {David Burke James Mahoney and Justin Falardeau and Patricia Hingston and Cora Chmielowska and Laura M Carroll and Martin Wiedmann and Sung Sik Jang and Siyun Wang},
year = {2022},
date = {2022-01-01},
journal = {Food Microbiology},
volume = {102},
pages = {103915},
publisher = {Academic Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Piacenza, Nicolo; Cheng, Rachel A; Wiedmann, Martin; Guldimann, Claudia
A multidrug-resistant Salmonella enterica serotype Typhimurium DT104 lineage circulating among humans and cattle in the United States lost the ability to produce pertussis-like toxin ArtAB in close temporal proximity to the global DT104 epidemic Journal Article
In: bioRxiv, 2022.
@article{carroll2022multidrug,
title = {A multidrug-resistant Salmonella enterica serotype Typhimurium DT104 lineage circulating among humans and cattle in the United States lost the ability to produce pertussis-like toxin ArtAB in close temporal proximity to the global DT104 epidemic},
author = {Laura M Carroll and Nicolo Piacenza and Rachel A Cheng and Martin Wiedmann and Claudia Guldimann},
year = {2022},
date = {2022-01-01},
journal = {bioRxiv},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Pierneef, Rian; Mathole, Aletta; Atanda, Abimbola; Matle, Itumeleng
Genomic Sequencing of Bacillus cereus Sensu Lato Strains Isolated from Meat and Poultry Products in South Africa Enables Inter-and Intranational Surveillance and Source Tracking Journal Article
In: Microbiology Spectrum, pp. e00700–22, 2022.
@article{carroll2022genomic,
title = {Genomic Sequencing of Bacillus cereus Sensu Lato Strains Isolated from Meat and Poultry Products in South Africa Enables Inter-and Intranational Surveillance and Source Tracking},
author = {Laura M Carroll and Rian Pierneef and Aletta Mathole and Abimbola Atanda and Itumeleng Matle},
year = {2022},
date = {2022-01-01},
journal = {Microbiology Spectrum},
pages = {e00700--22},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Marston, Chung K; Kolton, Cari B; Gulvik, Christopher A; Gee, Jay E; Weiner, Zachary P; Kovac, Jasna
Strains Associated with Two 2020 Welder Anthrax Cases in the United States Belong to Separate Lineages within Bacillus cereus sensu lato Journal Article
In: Pathogens, vol. 11, no. 8, pp. 856, 2022.
@article{carroll2022strains,
title = {Strains Associated with Two 2020 Welder Anthrax Cases in the United States Belong to Separate Lineages within Bacillus cereus sensu lato},
author = {Laura M Carroll and Chung K Marston and Cari B Kolton and Christopher A Gulvik and Jay E Gee and Zachary P Weiner and Jasna Kovac},
year = {2022},
date = {2022-01-01},
journal = {Pathogens},
volume = {11},
number = {8},
pages = {856},
publisher = {MDPI},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Matle, Itumeleng; Kovac, Jasna; Cheng, Rachel A; Wiedmann, Martin
Laboratory Misidentifications Resulting from Taxonomic Changes to Bacillus cereus Group Species, 2018--2022 Journal Article
In: Europe, 2022.
@article{carroll2022laboratory,
title = {Laboratory Misidentifications Resulting from Taxonomic Changes to Bacillus cereus Group Species, 2018--2022},
author = {Laura M Carroll and Itumeleng Matle and Jasna Kovac and Rachel A Cheng and Martin Wiedmann},
year = {2022},
date = {2022-01-01},
journal = {Europe},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Gaballa, Ahmed; Wiedmann, Martin; Carroll, Laura M
More than mcr: Canonical Plasmid-and Transposon-Encoded Mobilized Colistin Resistance (mcr) Genes Represent a Subset of Phosphoethanolamine Transferases Journal Article
In: bioRxiv, 2022.
@article{gaballa2022more,
title = {More than mcr: Canonical Plasmid-and Transposon-Encoded Mobilized Colistin Resistance (mcr) Genes Represent a Subset of Phosphoethanolamine Transferases},
author = {Ahmed Gaballa and Martin Wiedmann and Laura M Carroll},
year = {2022},
date = {2022-01-01},
journal = {bioRxiv},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Cohn, Alexa R; Orsi, Renato H; Carroll, Laura M; Liao, Jingqiu; Wiedmann, Martin; Cheng, Rachel A
Salmonella enterica serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle Journal Article
In: Frontiers in Microbiology, vol. 13, pp. 4725, 2022.
@article{cohn2022salmonella,
title = {Salmonella enterica serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle},
author = {Alexa R Cohn and Renato H Orsi and Laura M Carroll and Jingqiu Liao and Martin Wiedmann and Rachel A Cheng},
year = {2022},
date = {2022-01-01},
journal = {Frontiers in Microbiology},
volume = {13},
pages = {4725},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Ma, Yvonne; Chen, Jessica; Fong, Karen; Nadya, Stephanie; Allen, Kevin; Laing, Chad; Ziebell, Kim; Topp, Ed; Carroll, Laura M; Wiedmann, Martin; others,
Antibiotic resistance in shiga toxigenic Escherichia coli isolates from surface waters and sediments in a mixed use urban agricultural landscape Journal Article
In: Antibiotics, vol. 10, no. 3, pp. 237, 2021.
@article{ma2021antibiotic,
title = {Antibiotic resistance in shiga toxigenic Escherichia coli isolates from surface waters and sediments in a mixed use urban agricultural landscape},
author = {Yvonne Ma and Jessica Chen and Karen Fong and Stephanie Nadya and Kevin Allen and Chad Laing and Kim Ziebell and Ed Topp and Laura M Carroll and Martin Wiedmann and others},
year = {2021},
date = {2021-01-01},
journal = {Antibiotics},
volume = {10},
number = {3},
pages = {237},
publisher = {MDPI},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Larralde, Martin; Fleck, Jonas Simon; Ponnudurai, Ruby; Milanese, Alessio; Cappio, Elisa; Zeller, Georg
Accurate de novo identification of biosynthetic gene clusters with GECCO Journal Article
In: bioRxiv, 2021.
@article{carroll2021accurate,
title = {Accurate de novo identification of biosynthetic gene clusters with GECCO},
author = {Laura M Carroll and Martin Larralde and Jonas Simon Fleck and Ruby Ponnudurai and Alessio Milanese and Elisa Cappio and Georg Zeller},
year = {2021},
date = {2021-01-01},
journal = {bioRxiv},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kipper, Diéssy; Orsi, Renato H; Carroll, Laura M; Mascitti, Andrea K; Streck, André F; Fonseca, André SK; Ikuta, Nilo; Tondo, Eduardo C; Wiedmann, Martin; Lunge, Vagner R
Recent Evolution and Genomic Profile of Salmonella enterica Serovar Heidelberg Isolates from Poultry Flocks in Brazil Journal Article
In: Applied and environmental microbiology, vol. 87, no. 21, pp. e01036–21, 2021.
@article{kipper2021recent,
title = {Recent Evolution and Genomic Profile of Salmonella enterica Serovar Heidelberg Isolates from Poultry Flocks in Brazil},
author = {Diéssy Kipper and Renato H Orsi and Laura M Carroll and Andrea K Mascitti and André F Streck and André SK Fonseca and Nilo Ikuta and Eduardo C Tondo and Martin Wiedmann and Vagner R Lunge},
year = {2021},
date = {2021-01-01},
journal = {Applied and environmental microbiology},
volume = {87},
number = {21},
pages = {e01036--21},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Cohn, Alexa R; Orsi, Renato H; Carroll, Laura M; Chen, Ruixi; Wiedmann, Martin; Cheng, Rachel A
Characterization of basal transcriptomes identifies potential metabolic and virulence-associated adaptations among diverse nontyphoidal Salmonella enterica serovars Journal Article
In: Frontiers in microbiology, vol. 12, 2021.
@article{cohn2021characterization,
title = {Characterization of basal transcriptomes identifies potential metabolic and virulence-associated adaptations among diverse nontyphoidal Salmonella enterica serovars},
author = {Alexa R Cohn and Renato H Orsi and Laura M Carroll and Ruixi Chen and Martin Wiedmann and Rachel A Cheng},
year = {2021},
date = {2021-01-01},
journal = {Frontiers in microbiology},
volume = {12},
publisher = {Frontiers Media SA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Pierneef, Rian; Mathole, Masenyabu; Matle, Itumeleng
Genomic characterization of endemic and ecdemic non-typhoidal Salmonella enterica lineages circulating among animals and animal products in South Africa Journal Article
In: Frontiers in microbiology, vol. 12, 2021.
@article{carroll2021genomic,
title = {Genomic characterization of endemic and ecdemic non-typhoidal Salmonella enterica lineages circulating among animals and animal products in South Africa},
author = {Laura M Carroll and Rian Pierneef and Masenyabu Mathole and Itumeleng Matle},
year = {2021},
date = {2021-01-01},
journal = {Frontiers in microbiology},
volume = {12},
publisher = {Frontiers Media SA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Buehler, Ariel J; Gaballa, Ahmed; Siler, Julie D; Cummings, Kevin J; Cheng, Rachel A; Wiedmann, Martin
Monitoring the Microevolution of Salmonella enterica in Healthy Dairy Cattle Populations at the Individual Farm Level Using Whole-Genome Sequencing Journal Article
In: Frontiers in microbiology, pp. 3166, 2021.
@article{carroll2021monitoring,
title = {Monitoring the Microevolution of Salmonella enterica in Healthy Dairy Cattle Populations at the Individual Farm Level Using Whole-Genome Sequencing},
author = {Laura M Carroll and Ariel J Buehler and Ahmed Gaballa and Julie D Siler and Kevin J Cummings and Rachel A Cheng and Martin Wiedmann},
year = {2021},
date = {2021-01-01},
journal = {Frontiers in microbiology},
pages = {3166},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Wiedmann, Martin; Kovac, Jasna
Proposal of a taxonomic nomenclature for the Bacillus cereus group which reconciles genomic definitions of bacterial species with clinical and industrial phenotypes Journal Article
In: MBio, vol. 11, no. 1, pp. e00034–20, 2020.
@article{carroll2020proposal,
title = {Proposal of a taxonomic nomenclature for the Bacillus cereus group which reconciles genomic definitions of bacterial species with clinical and industrial phenotypes},
author = {Laura M Carroll and Martin Wiedmann and Jasna Kovac},
year = {2020},
date = {2020-01-01},
journal = {MBio},
volume = {11},
number = {1},
pages = {e00034--20},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Beno, Sarah M; Cheng, Rachel A; Orsi, Renato H; Duncan, Diana R; Guo, Xiaodong; Kovac, Jasna; Carroll, Laura M; Martin, Nicole H; Wiedmann, Martin
Paenibacillus odorifer, the predominant Paenibacillus species isolated from milk in the United States, demonstrates genetic and phenotypic conservation of psychrotolerance but clade-associated differences in nitrogen metabolic pathways Journal Article
In: Msphere, vol. 5, no. 1, pp. e00739–19, 2020.
@article{beno2020paenibacillus,
title = {Paenibacillus odorifer, the predominant Paenibacillus species isolated from milk in the United States, demonstrates genetic and phenotypic conservation of psychrotolerance but clade-associated differences in nitrogen metabolic pathways},
author = {Sarah M Beno and Rachel A Cheng and Renato H Orsi and Diana R Duncan and Xiaodong Guo and Jasna Kovac and Laura M Carroll and Nicole H Martin and Martin Wiedmann},
year = {2020},
date = {2020-01-01},
journal = {Msphere},
volume = {5},
number = {1},
pages = {e00739--19},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Liao, Jingqiu; Orsi, Renato Hohl; Carroll, Laura M; Wiedmann, Martin
Comparative genomics reveals different population structures associated with host and geographic origin in antimicrobial-resistant Salmonella enterica Journal Article
In: Environmental microbiology, vol. 22, no. 7, pp. 2811–2828, 2020.
@article{liao2020comparative,
title = {Comparative genomics reveals different population structures associated with host and geographic origin in antimicrobial-resistant Salmonella enterica},
author = {Jingqiu Liao and Renato Hohl Orsi and Laura M Carroll and Martin Wiedmann},
year = {2020},
date = {2020-01-01},
journal = {Environmental microbiology},
volume = {22},
number = {7},
pages = {2811--2828},
publisher = {John Wiley & Sons, Inc. Hoboken, USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Cheng, Rachel A; Kovac, Jasna
No assembly required: using BTyper3 to assess the congruency of a proposed taxonomic framework for the Bacillus cereus group with historical typing methods Journal Article
In: Frontiers in microbiology, vol. 11, pp. 580691, 2020.
@article{carroll2020no,
title = {No assembly required: using BTyper3 to assess the congruency of a proposed taxonomic framework for the Bacillus cereus group with historical typing methods},
author = {Laura M Carroll and Rachel A Cheng and Jasna Kovac},
year = {2020},
date = {2020-01-01},
journal = {Frontiers in microbiology},
volume = {11},
pages = {580691},
publisher = {Frontiers Media SA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Huisman, Jana S; Wiedmann, Martin
Twentieth-century emergence of antimicrobial resistant human-and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State Journal Article
In: Scientific reports, vol. 10, no. 1, pp. 1–15, 2020.
@article{carroll2020twentieth,
title = {Twentieth-century emergence of antimicrobial resistant human-and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State},
author = {Laura M Carroll and Jana S Huisman and Martin Wiedmann},
year = {2020},
date = {2020-01-01},
journal = {Scientific reports},
volume = {10},
number = {1},
pages = {1--15},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kipper, Diéssy; Carroll, Laura M; Mascitti, Andrea K; Streck, André F; Fonseca, André SK; Ikuta, Nilo; Lunge, Vagner R
Genomic characterization of Salmonella Minnesota clonal lineages associated with poultry production in Brazil Journal Article
In: Animals, vol. 10, no. 11, pp. 2043, 2020.
@article{kipper2020genomic,
title = {Genomic characterization of Salmonella Minnesota clonal lineages associated with poultry production in Brazil},
author = {Diéssy Kipper and Laura M Carroll and Andrea K Mascitti and André F Streck and André SK Fonseca and Nilo Ikuta and Vagner R Lunge},
year = {2020},
date = {2020-01-01},
journal = {Animals},
volume = {10},
number = {11},
pages = {2043},
publisher = {MDPI},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Wiedmann, Martin
Cereulide synthetase acquisition and loss events within the evolutionary history of Group III Bacillus cereus sensu lato facilitate the transition between emetic and diarrheal foodborne pathogen Journal Article
In: MBio, vol. 11, no. 4, pp. e01263–20, 2020.
@article{carroll2020cereulide,
title = {Cereulide synthetase acquisition and loss events within the evolutionary history of Group III Bacillus cereus sensu lato facilitate the transition between emetic and diarrheal foodborne pathogen},
author = {Laura M Carroll and Martin Wiedmann},
year = {2020},
date = {2020-01-01},
journal = {MBio},
volume = {11},
number = {4},
pages = {e01263--20},
publisher = {American Society for Microbiology},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Acevedo, Marysabel Méndez; Carroll, Laura M; Mukherjee, Manjari; Mills, Emma; Xiaoli, Lingzi; Dudley, Edward G; Kovac, Jasna
Novel effective Bacillus cereus group species “Bacillus clarus” is represented by antibiotic-producing strain ATCC 21929 isolated from soil Journal Article
In: mSphere, vol. 5, no. 6, pp. e00882–20, 2020.
@article{mendez2020novel,
title = {Novel effective Bacillus cereus group species “Bacillus clarus” is represented by antibiotic-producing strain ATCC 21929 isolated from soil},
author = {Marysabel Méndez Acevedo and Laura M Carroll and Manjari Mukherjee and Emma Mills and Lingzi Xiaoli and Edward G Dudley and Jasna Kovac},
year = {2020},
date = {2020-01-01},
journal = {mSphere},
volume = {5},
number = {6},
pages = {e00882--20},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Wiedmann, Martin; Mukherjee, Manjari; Nicholas, David C; Mingle, Lisa A; Dumas, Nellie B; Cole, Jocelyn A; Kovac, Jasna
Characterization of emetic and diarrheal Bacillus cereus strains from a 2016 foodborne outbreak using whole-genome sequencing: addressing the microbiological, epidemiological, and bioinformatic challenges Journal Article
In: Frontiers in microbiology, vol. 10, pp. 144, 2019.
@article{carroll2019characterization,
title = {Characterization of emetic and diarrheal Bacillus cereus strains from a 2016 foodborne outbreak using whole-genome sequencing: addressing the microbiological, epidemiological, and bioinformatic challenges},
author = {Laura M Carroll and Martin Wiedmann and Manjari Mukherjee and David C Nicholas and Lisa A Mingle and Nellie B Dumas and Jocelyn A Cole and Jasna Kovac},
year = {2019},
date = {2019-01-01},
journal = {Frontiers in microbiology},
volume = {10},
pages = {144},
publisher = {Frontiers Media SA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Gaballa, Ahmed; Guldimann, Claudia; Sullivan, Genevieve; Henderson, Lory O; Wiedmann, Martin
Identification of novel mobilized colistin resistance gene mcr-9 in a multidrug-resistant, colistin-susceptible Salmonella enterica serotype Typhimurium isolate Journal Article
In: MBio, vol. 10, no. 3, pp. e00853–19, 2019.
@article{carroll2019identification,
title = {Identification of novel mobilized colistin resistance gene mcr-9 in a multidrug-resistant, colistin-susceptible Salmonella enterica serotype Typhimurium isolate},
author = {Laura M Carroll and Ahmed Gaballa and Claudia Guldimann and Genevieve Sullivan and Lory O Henderson and Martin Wiedmann},
year = {2019},
date = {2019-01-01},
journal = {MBio},
volume = {10},
number = {3},
pages = {e00853--19},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Harrand, Anna Sophia; Kovac, Jasna; Carroll, Laura M; Guariglia-Oropeza, Veronica; Kent, David J; Wiedmann, Martin
Assembly and characterization of a pathogen strain collection for produce safety applications: pre-growth conditions have a larger effect on peroxyacetic acid tolerance than strain diversity Journal Article
In: Frontiers in microbiology, vol. 10, pp. 1223, 2019.
@article{harrand2019assembly,
title = {Assembly and characterization of a pathogen strain collection for produce safety applications: pre-growth conditions have a larger effect on peroxyacetic acid tolerance than strain diversity},
author = {Anna Sophia Harrand and Jasna Kovac and Laura M Carroll and Veronica Guariglia-Oropeza and David J Kent and Martin Wiedmann},
year = {2019},
date = {2019-01-01},
journal = {Frontiers in microbiology},
volume = {10},
pages = {1223},
publisher = {Frontiers Media SA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Liao, Jingqiu; Orsi, Renato Hohl; Carroll, Laura M; Kovac, Jasna; Ou, Hongyu; Zhang, Hailong; Wiedmann, Martin
Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica Journal Article
In: BMC evolutionary biology, vol. 19, no. 1, pp. 1–20, 2019.
@article{liao2019serotype,
title = {Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica},
author = {Jingqiu Liao and Renato Hohl Orsi and Laura M Carroll and Jasna Kovac and Hongyu Ou and Hailong Zhang and Martin Wiedmann},
year = {2019},
date = {2019-01-01},
journal = {BMC evolutionary biology},
volume = {19},
number = {1},
pages = {1--20},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M
High-Throughput Characterization of Foodborne Pathogens using Next-Generation Sequencing PhD Thesis
Cornell University, 2019.
@phdthesis{carroll2019high,
title = {High-Throughput Characterization of Foodborne Pathogens using Next-Generation Sequencing},
author = {Laura M Carroll},
year = {2019},
date = {2019-01-01},
school = {Cornell University},
keywords = {},
pubstate = {published},
tppubtype = {phdthesis}
}
Pereira, Richard Van Vleck; Carroll, Laura M; Lima, Svetlana; Foditsch, Carla; Siler, Julie D; Bicalho, Rodrigo Carvalho; Warnick, Lorin D
Impacts of feeding preweaned calves milk containing drug residues on the functional profile of the fecal microbiota Journal Article
In: Scientific reports, vol. 8, no. 1, pp. 1–12, 2018.
@article{pereira2018impacts,
title = {Impacts of feeding preweaned calves milk containing drug residues on the functional profile of the fecal microbiota},
author = {Richard Van Vleck Pereira and Laura M Carroll and Svetlana Lima and Carla Foditsch and Julie D Siler and Rodrigo Carvalho Bicalho and Lorin D Warnick},
year = {2018},
date = {2018-01-01},
journal = {Scientific reports},
volume = {8},
number = {1},
pages = {1--12},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Wiedmann, Martin; Carroll, Laura M
Next-generation sequencing Journal Article
In: Encyclo. Food Chem, pp. 376, 2018.
@article{wiedmann2018next,
title = {Next-generation sequencing},
author = {Martin Wiedmann and Laura M Carroll},
year = {2018},
date = {2018-01-01},
journal = {Encyclo. Food Chem},
pages = {376},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Zurfluh, Katrin; Jang, Hyein; Gopinath, GR; Nüesch-Inderbinen, Magdalena; Poirel, Laurent; Nordmann, Patrice; Stephan, Roger; Guldimann, Claudia
First report of an mcr-1-harboring Salmonella enterica subsp. enterica serotype 4, 5, 12: i:-strain isolated from blood of a patient in Switzerland Journal Article
In: International Journal of Antimicrobial Agents, vol. 52, no. 5, pp. 740–741, 2018.
@article{carroll2018first,
title = {First report of an mcr-1-harboring Salmonella enterica subsp. enterica serotype 4, 5, 12: i:-strain isolated from blood of a patient in Switzerland},
author = {Laura M Carroll and Katrin Zurfluh and Hyein Jang and GR Gopinath and Magdalena Nüesch-Inderbinen and Laurent Poirel and Patrice Nordmann and Roger Stephan and Claudia Guldimann},
year = {2018},
date = {2018-01-01},
journal = {International Journal of Antimicrobial Agents},
volume = {52},
number = {5},
pages = {740--741},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Wiedmann, Martin; Bakker, Henk; Siler, Julie; Warchocki, Steven; Kent, David; Lyalina, Svetlana; Davis, Margaret; Sischo, William; Besser, Thomas; others,
Whole-genome sequencing of drug-resistant Salmonella enterica isolates from dairy cattle and humans in New York and Washington states reveals source and geographic associations Journal Article
In: Applied and environmental microbiology, vol. 83, no. 12, pp. e00140–17, 2017.
@article{carroll2017whole,
title = {Whole-genome sequencing of drug-resistant Salmonella enterica isolates from dairy cattle and humans in New York and Washington states reveals source and geographic associations},
author = {Laura M Carroll and Martin Wiedmann and Henk Bakker and Julie Siler and Steven Warchocki and David Kent and Svetlana Lyalina and Margaret Davis and William Sischo and Thomas Besser and others},
year = {2017},
date = {2017-01-01},
journal = {Applied and environmental microbiology},
volume = {83},
number = {12},
pages = {e00140--17},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kovac, Jasna; Cummings, Kevin J; Rodriguez-Rivera, Lorraine D; Carroll, Laura M; Thachil, Anil; Wiedmann, Martin
Temporal genomic phylogeny reconstruction indicates a geospatial transmission path of Salmonella Cerro in the United States and a clade-specific loss of hydrogen sulfide production Journal Article
In: Frontiers in microbiology, vol. 8, pp. 737, 2017.
@article{kovac2017temporal,
title = {Temporal genomic phylogeny reconstruction indicates a geospatial transmission path of Salmonella Cerro in the United States and a clade-specific loss of hydrogen sulfide production},
author = {Jasna Kovac and Kevin J Cummings and Lorraine D Rodriguez-Rivera and Laura M Carroll and Anil Thachil and Martin Wiedmann},
year = {2017},
date = {2017-01-01},
journal = {Frontiers in microbiology},
volume = {8},
pages = {737},
publisher = {Frontiers Media SA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kovac, Jasna; Bakker, Henk; Carroll, Laura M; Wiedmann, Martin
Precision food safety: a systems approach to food safety facilitated by genomics tools Journal Article
In: TrAC Trends in Analytical Chemistry, vol. 96, pp. 52–61, 2017.
@article{kovac2017precision,
title = {Precision food safety: a systems approach to food safety facilitated by genomics tools},
author = {Jasna Kovac and Henk Bakker and Laura M Carroll and Martin Wiedmann},
year = {2017},
date = {2017-01-01},
journal = {TrAC Trends in Analytical Chemistry},
volume = {96},
pages = {52--61},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Kovac, Jasna; Miller, Rachel A; Wiedmann, Martin
Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies via BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates by using nucleotide sequencing data Journal Article
In: Applied and environmental microbiology, vol. 83, no. 17, pp. e01096–17, 2017.
@article{carroll2017rapid,
title = {Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies via BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates by using nucleotide sequencing data},
author = {Laura M Carroll and Jasna Kovac and Rachel A Miller and Martin Wiedmann},
year = {2017},
date = {2017-01-01},
journal = {Applied and environmental microbiology},
volume = {83},
number = {17},
pages = {e01096--17},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Miller, Rachel A; Beno, Sarah M; Kent, David J; Carroll, Laura M; Martin, Nicole H; Boor, Kathryn J; Kovac, Jasna
Bacillus wiedmannii sp. nov., a psychrotolerant and cytotoxic Bacillus cereus group species isolated from dairy foods and dairy environments Journal Article
In: International journal of systematic and evolutionary microbiology, vol. 66, no. 11, pp. 4744, 2016.
@article{miller2016bacillus,
title = {Bacillus wiedmannii sp. nov., a psychrotolerant and cytotoxic Bacillus cereus group species isolated from dairy foods and dairy environments},
author = {Rachel A Miller and Sarah M Beno and David J Kent and Laura M Carroll and Nicole H Martin and Kathryn J Boor and Jasna Kovac},
year = {2016},
date = {2016-01-01},
journal = {International journal of systematic and evolutionary microbiology},
volume = {66},
number = {11},
pages = {4744},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Carroll, Laura M; Bergholz, Teresa M; Hildebrandt, Ian M; Marks, Bradley P
Application of a nonlinear model to transcript levels of upregulated stress response gene ibpA in stationary-phase Salmonella enterica subjected to sublethal heat stress Journal Article
In: Journal of food protection, vol. 79, no. 7, pp. 1089–1096, 2016.
@article{carroll2016application,
title = {Application of a nonlinear model to transcript levels of upregulated stress response gene ibpA in stationary-phase Salmonella enterica subjected to sublethal heat stress},
author = {Laura M Carroll and Teresa M Bergholz and Ian M Hildebrandt and Bradley P Marks},
year = {2016},
date = {2016-01-01},
journal = {Journal of food protection},
volume = {79},
number = {7},
pages = {1089--1096},
publisher = {International Association for Food Protection},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kovac, Jasna; Miller, Rachel A; Carroll, Laura M; Kent, David J; Jian, Jiahui; Beno, Sarah M; Wiedmann, Martin
Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade Journal Article
In: BMC genomics, vol. 17, no. 1, pp. 1–16, 2016.
@article{kovac2016production,
title = {Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade},
author = {Jasna Kovac and Rachel A Miller and Laura M Carroll and David J Kent and Jiahui Jian and Sarah M Beno and Martin Wiedmann},
year = {2016},
date = {2016-01-01},
journal = {BMC genomics},
volume = {17},
number = {1},
pages = {1--16},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
(Meta)genomic sequencing is playing an increasingly pivotal role in clinical and public health microbiology. As such, the amount of publicly available (meta)genomic data derived from microbes—including pathogens—is growing rapidly. Laura Carroll’s research group develops and utilizes bioinformatic approaches, which can leverage these massive data sets to improve pathogen surveillance, source tracking, outbreak detection, and risk evaluation efforts.
Current Projects
Machine learning approaches for novel secondary metabolite discovery
with Dr. Georg Zeller (EMBL, Germany)
Genomic surveillance of antimicrobial resistant (AMR) foodborne zoonotic pathogens along the food supply chain
with Drs. Martin Wiedmann (Cornell University, USA), Claudia Guldimann (LMU Munich, Germany), and Rachel Cheng (Virginia Tech, USA)
In silico tools to improve Bacillus cereus group surveillance and risk evaluation
with Drs. Jasna Kovac (Penn State, USA) and Johan Henriksson (UmU)
Genomic surveillance and source tracking of foodborne pathogens in South Africa
with Dr. Itumeleng Matle (Onderstepoort Veterinary Research, South Africa)
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